Write Insight Newsletter · · 10 min read

How do you structure the paper writing process?

Turning a vague research idea into a submission-ready manuscript without wasting months on false starts.

A student working on papers on their laptop.
Sometimes knowing where to start is the hardest part...
​Paid Write Insight Members get a complete paper-writing system today including a 6-week schedule, diagnostic tools for identifying writing bottlenecks, a literature matrix template, a structured 90-minute block breakdown, research question filters, a quality checklist, and AI prompts for improving academic drafts, all nicely bundled in a Notion template you can duplicate.

You know what stops most researchers from finishing papers on time?

It’s not a lack of data. It’s not insufficient knowledge. It’s the paralysis that comes from staring at a blank page with zero structure to follow. You sit down to write, waste three hours reorganizing references, and end up with two mediocre paragraphs. That is if you even get to writing at all. Then you wonder why your colleague submitted three papers while you’re still stuck on the introduction of one.

The solution isn’t working harder or finding more time, but you need a systematic process that removes decision fatigue from every stage of paper writing.

So today, I’m walking you through a 4-phase system that turns paper writing from an overwhelming project that you never get started with into a series of concrete, completable tasks.

Phase 1: Install the right mental framework before you write a single word

Most writing advice skips this entirely, but your mindset determines whether you finish papers or abandon them halfway through.

Start by accepting that writing stuff is inherently difficult. Even tenured professors with 100+ publications find writing hard. The difference is that they don’t interpret difficulty as a signal they’re doing it wrong. When you hit resistance, that’s normal. Steven Pressfield calls it Resistance with a capital R in his book The War of Art. It’s the internal force that stops you from doing your work. It shows up as fear, self-doubt, procrastination, and perfectionism. Resistance is invisible but you feel it as an energy field radiating from work you need to do. Amateurs quit at this point and check email. Pros show up every day no matter what. So, if you want to master your craft like a Pro (and I would say many PhDs are Pros), you have to feel the fear instead of waiting to overcome it first. Do the work anyway.

The best way to get there is to eliminate perfectionism from your first draft. You cannot edit a blank page, but you can edit a terrible page. Give yourself permission to write badly in the first pass. We call this a zero draft. Your job in that draft is to get ideas out of your head and into a document. Quality comes later during revision. This also means you should only write papers about topics you care about. The process is much too painful to go through it for some mediocre outcome that doesn’t tickle your fancy.

Next, schedule specific writing blocks in your calendar. Don’t find time to write, you never will. You make time. Treat 90-minute writing sessions as non-negotiable appointments. If you’re balancing a PhD with a full-time job, even three 90-minute blocks per week will produce a complete draft in 4–6 weeks. Yes, that is possible and something I help my coaching clients with all the time.

Finally, understand that writing generates thinking. Many researchers delay writing until they’ve figured everything out in their head. This is backwards. Writing is how you discover what you actually think. The act of converting vague ideas into sentences forces clarity. Writing is thinking.

Phase 2: Narrow your focus until you have one specific, answerable question

Broad topics kill papers before they start. Specificity wins.

Begin with a research question that is researchable, arguable, feasible, and relevant. “How does social media affect mental health?” is too broad. “How does Instagram use correlate with anxiety symptoms in undergraduate women?” is specific enough to actually research and write about in an 8,000-word paper.

Read strategically to find the gap your paper will fill and how it ties to a larger problem in the world. You’re not reading to absorb everything ever written on your topic. There’s too much research out there. You’re reading to identify what hasn’t been answered yet. Look for phrases in discussion sections like future research should examine or this study was limited by. Those sentences hand you a research gap on a silver platter. You just have to find them.

Citation Core Question Method Key Finding Limitation/Gap Connects To
Smith et al. (2023) Does X cause Y in Z population? RCT, n=240 Moderate effect size (d=0.52) Small sample, single site Jones (2021), Lee (2022)
Jones (2021) How does A relate to B? Cross-sectional survey, n=1,200 Positive correlation but causality unclear Self-report bias, no follow-up Current study addresses this

Create a literature matrix as you read (see example above). Set up a simple table with columns for: Author/Year, Research Question, Methods, Key Findings, and Gaps/Limitations. This takes 30 seconds per paper to fill out but saves you hours later when you’re trying to remember which study found what. Use a reference manager like Zotero to auto-generate citations so you’re not manually formatting references until the early morning hours.

Develop a working thesis statement after you’ve read 10-15 core papers. A thesis statement should be a single, clear, specific, and focused sentence that presents your main argument, but is arguable (e.g., something that requires evidence and can be debated). It follows this structure: Topic + Position + Reasoning or Significance.

Here’s how to find one quickly:

  1. Identify your main argument: What’s the single most important claim?
  2. Add your supporting pillars: What 2-3 key points support this?
  3. Combine: Merge into one clear, compelling sentence.
  4. Test it: Can you defend it? Is it specific enough? Does it guide your paper?

This thesis will change as you write. That’s expected. But you need a preliminary statement of direction before drafting. Without it, you’ll write in circles. Basically, first ask yourself: What am I arguing, and why should anyone care?

Phase 3: Draft in the correct order and structure sections with extreme clarity

Never write linearly from introduction to conclusion. That’s how you read a paper, but not how you write one.

Start with your Methods section. It’s the easiest to write because it’s purely descriptive, meaning you’re just explaining what you did. Getting 1,000 words on paper immediately builds momentum and eliminates the intimidation of a blank document. So, I always recommend to start with the Methods.

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Ideally, before you do the Methods, you will have done a bit of literature review (already at the research gap/research question stage), so you can also write the Related Work (or literature review) section first in bullet-point form. Either way, you’ll need a literature review matrix for your Discussion section.

Write your Results section second. Again, this is straightforward reporting of your findings after you run the experiment. No interpretation yet, just presenting data.

Draft your Discussion section third. Now you interpret results, connect findings to the literature, and explain implications. You synthesize prior work and situate your results in it. This section serves to clarify your argument, which makes writing the introduction much easier. Many PhD students struggle with the discussion because it requires them to make original knowledge claims and interpret their results speculatively without being too literal or too unbelievable. This demands a level of authority and creative thinking that you might have not had to demonstrate before. Accept this. Write it anyways.

Write your Introduction last. You need to know where you ended up before you can write an effective roadmap. Your introduction should accomplish five things in order: introduce the broad problem, summarize current knowledge briefly, identify the gap related to the problem, state your research question, and position your paper as the solution to that gap, which means explicitly mentioning your contribution to the field.

Use standardized headings. Don’t get creative with section titles. Stick with Introduction, Related Work, Methods, Results, Discussion. (Some fields merge Introduction and Related Work, but in HCI, we like to keep these sections separate.) Reviewers and readers expect these headings. Making them hunt for information frustrates them. Don’t fall into that trap.

Keep paragraphs focused on one idea. Each paragraph needs a topic sentence that states the main point, 3-5 sentences of evidence supporting that point, and a transition sentence connecting to the next paragraph. If a paragraph covers multiple ideas, split it in your edits later.

Phase 4: Iterate your rough draft through structured revision and targeted feedback

Your first draft is a starting point. Don’t envision it or treat it as a finished product. It’s cool to be messy and awkward like Urcle.

Get feedback at the right stage. Don’t ask colleagues to review grammar and sentence structure when you’re still figuring out your argument. For early drafts, request conceptual feedback: Is the gap clear? Does the argument flow logically? Does the data support the claims? Always tell your reviewers exactly what you need from them and never just ask them to “review my paper, please.”

Revise in two distinct passes. Pass one addresses big-picture issues: Argument clarity, section organization, paragraph flow. Pass two handles sentence-level editing: Word choice, grammar, citation formatting. Trying to do both simultaneously wastes time and mental energy. One at a time.

Use your institution’s writing centre if you can. Excellent people work there. If you’re a non-native English speaker or writing in a second language, a writing centre consultation can catch idiomatic errors and clarity issues you’d never notice yourself. Most universities offer this service free to students and faculty.

Build in buffer time before submission deadlines. The gap between finished draft and submission-ready manuscript is usually 2–3 weeks of proofreading, formatting, and final polishing. Never rush a deadline. It will always be a mess. Trust me. A messy publication is worse than no publication. Also, too many researchers who rush this phase produce papers that get desk rejected anyways, often even for minor formatting violations.

Read your paper out loud during final proofreading (or get a text-to-speech app to do it for you, like ElevenReader). Your eyes will skip some errors that your ears will catch. It’s a great way to catch awkward phrasing, run-on sentences, and logical gaps that seem fine when reading silently.

So, don’t think the researchers who publish consistently have more time or talent than you. They just have a systematic process that removes decision paralysis from every stage. Install this 4-phase framework and you’ll cut months off your paper timeline. Best of luck.

P.S.: Curious to explore how we can tackle your research struggles together? I've got three suggestions that could be a great fit: A seven-day email course that teaches you the basics of research methods. Or the recordings of our ​AI research tools webinar​ and ​PhD student fast track webinar​.

Bonus Materials

Paid Write Insight Members get a complete paper-writing system today including a 6-week schedule, diagnostic tools for identifying writing bottlenecks, a literature matrix template, a structured 90-minute block breakdown, research question filters, a quality checklist, and AI prompts for improving academic drafts, all nicely bundled in a Notion template you can duplicate.

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